Sharepoint annoyances

Have a bit of a time trying to fix up this mess of a sharepoint site. First thing we got our 3GB database off SQL express. Now we are on standard, I need to fix up the database itself. Myself and a co-worker (Steve) are having a tuff time figuring out how to restructure the site, since it was setup in a very odd manner. I think we have some good ideas, so lets hope we can get a good structure to it. I would post the hierarchy we are moving towards here, but I probably shouldn't J